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CellProfiler and Gentoo

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CellProfiler is free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically. See our papers on analyzing cell images and non-cell images.

First we need to install the dependecies ( as root):
dev-python/matplotlib wxwidgets>>/etc/portage/package.use
echo "dev-python/h5py">>/etc/portage/package.keywords

dev-python/numpy lapack >>/etc/portage/package.use
emerge -1 lapack-atlas scipy

atlas will take long to merge but will not take up much space so there is not to worry if portage dir is on tmpfs

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Written by gas

aprile 10th, 2012 at 8:52 am

Posted in English,Linux

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Unmerge Kde in gentoo

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Update

emerge --ask -C `eix -C kde-base --only-names --installed`

nano /etc/make.conf

and delete kde from the USE flags, remove qt3support and qt4 also if you don’t need them anymore

emerge -uavtqND world"

Now you should have just a few kde packages in the list you got as an output of that command, it’s your choice to leave them or unmerge them manually, with unmerge -pv –depclean you can see what packages pulls in your atom.

Written by gas

luglio 24th, 2010 at 11:48 am

Posted in English,Linux

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Indirizzo ip dinamico e dyndns opendns

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Ogni qualvolta ci si collega ad internet viene assegnato un indirizzo ip pubblico al proprio computer/router, in Italia quasi tutte le connessioni adsl private hanno un ip dinamico che camba tutte le volte che ci si riconnette. Può tornare comodo conoscere questo ip per poter raggiungere il proprio computer dall’esterno ( lavoro, università ) e per evitare di doverselo scrivere su un “post it” tutte le volte che si accende il modem è possibile utilizzare un dns dinamico .

Razionale

  1. iscriversi ad un servizio di dns dinamico, si potrà scegliere un dominio di terzo livello ( terzolivello.secondolivello.it) a cui associare l’indirizzo ip del computer.
  2. iscriversi a dnsomatic che provvederà a fornire a tutti i servizi che si usano (come i servizi di dns dinamico ma anche altri come opendns) l’indirizzo ip del computer
  3. usare un client che al cambio dell’indirizzo ip avvisa dnsomatic

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Written by gas

dicembre 27th, 2009 at 2:39 pm

Posted in Generale,Linux

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Ubuntu on Toshiba A300 PSAJ4E

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toshiba a300Info
00:00.0 Host bridge: Intel Corporation Mobile PM965/GM965/GL960 Memory Controller Hub (rev 03)
00:01.0 PCI bridge: Intel Corporation Mobile PM965/GM965/GL960 PCI Express Root Port (rev 03)
00:1a.0 USB Controller: Intel Corporation 82801H (ICH8 Family) USB UHCI Controller #4 (rev 03)
00:1a.1 USB Controller: Intel Corporation 82801H (ICH8 Family) USB UHCI Controller #5 (rev 03)
00:1a.7 USB Controller: Intel Corporation 82801H (ICH8 Family) USB2 EHCI Controller #2 (rev 03)
00:1b.0 Audio device: Intel Corporation 82801H (ICH8 Family) HD Audio Controller (rev 03)
00:1c.0 PCI bridge: Intel Corporation 82801H (ICH8 Family) PCI Express Port 1 (rev 03)
00:1c.1 PCI bridge: Intel Corporation 82801H (ICH8 Family) PCI Express Port 2 (rev 03)
00:1c.3 PCI bridge: Intel Corporation 82801H (ICH8 Family) PCI Express Port 4 (rev 03)
00:1d.0 USB Controller: Intel Corporation 82801H (ICH8 Family) USB UHCI Controller #1 (rev 03)
00:1d.1 USB Controller: Intel Corporation 82801H (ICH8 Family) USB UHCI Controller #2 (rev 03)
00:1d.2 USB Controller: Intel Corporation 82801H (ICH8 Family) USB UHCI Controller #3 (rev 03)
00:1d.7 USB Controller: Intel Corporation 82801H (ICH8 Family) USB2 EHCI Controller #1 (rev 03)
00:1e.0 PCI bridge: Intel Corporation 82801 Mobile PCI Bridge (rev f3)
00:1f.0 ISA bridge: Intel Corporation 82801HEM (ICH8M) LPC Interface Controller (rev 03)
00:1f.1 IDE interface: Intel Corporation 82801HBM/HEM (ICH8M/ICH8M-E) IDE Controller (rev 03)
00:1f.2 SATA controller: Intel Corporation 82801HBM/HEM (ICH8M/ICH8M-E) SATA AHCI Controller (rev 03)
00:1f.3 SMBus: Intel Corporation 82801H (ICH8 Family) SMBus Controller (rev 03)
01:00.0 VGA compatible controller: ATI Technologies Inc Mobilitiy Radeon HD 3400 Series
01:00.1 Audio device: ATI Technologies Inc RV620 Audio device [Radeon HD 34xx Series]
02:00.0 Network controller: Intel Corporation PRO/Wireless 3945ABG Network Connection (rev 02)
03:00.0 Ethernet controller: Marvell Technology Group Ltd. Unknown device 4355 (rev 12)
0a:01.0 FireWire (IEEE 1394): O2 Micro, Inc. Firewire (IEEE 1394) (rev 02)
0a:01.2 SD Host controller: O2 Micro, Inc. Integrated MMC/SD Controller (rev 02)
0a:01.3 Mass storage controller: O2 Micro, Inc. Integrated MS/xD Controller (rev 01)

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Written by gas

luglio 17th, 2008 at 10:15 pm

Posted in English,Linux

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Sync: Nokia , Thunderbird and Google Calendar

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I need to sync many applications on different devices so the best idea for me was using a central server where I can sync too. ScheduleWolrd is a funambol based service that regardless of its ugly interface does what I want .This small howto covers my Nokia N95 , thunderbird + lightning and Google Calendar but it should work with many other devices or applications. Syncing between ScheduleWorld and Google Calendar works mostly out of the box.
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Written by gas

dicembre 29th, 2007 at 6:08 pm

Posted in English,Generale,Linux

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